Publicaciones SCI
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 López-García, A., Gil-Tapetado, D., Aguirre, J.I. 2023. Drastic reduction of the population distribution of White Storks predicted in absence of landfills. Ornithological Applications.  |
 Hernández-Téllez, I., Martínez-Miranzo, B., Gil-Tapetado, D., Lopes, F., Esperon, F., Cabrero-Sañudo, F.J. & Aguirre, J.I. 2023. Disease prevalence in an urban raptor related to pest species: the case of Eurasian Scops Owl (Otus scops) infection by Gongylonema sp. Ibis, |
 Tobolka , M., Aguirre, J.I., Dylewski, L. , López-García, A., Gimeno Martínez, R. & Zbyryt, A.2023. The usefulness of Unmanned Aerial Vehicles (UAV) in white stork censusing. European Journal of Wildlife Research |
 Jagiello, Z., Dylewski, L., Aguirre, J.I., Białas, J.T., Dylik, A., López-García, A., Kaługa, I., Olszewski, A., Siekiera, J. & Tobółka, M. 2023. The prevalence of anthropogenic nest materials differs between two distinct populations of migratory birds in Europe. Environmental Science and Pollution Research, 30: 69703–69710 |
 Elena Ramos-E., Banda, E., Arizaga, J., Martin, D., Aguirre, J.I. 2023. Long-Term Population Trends of House Sparrow and Eurasian Tree Sparrow in Spain. Birds. |
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López-García, A., Aguirre, J.I. 2023. White Storks nest at high densities near landfills changing stork nesting distributions in the last four decades in Central Spain.Ornithological Applications, 125(2). |
| Martínez-Miranzo, B., Conde, M. & Aguirre, J.I. 2023. Early stages of home range settlement in a newly reintroduced raptor on an island: Bonelli’s eagle (Aquila fasciata) on Mallorca, Spain. European Journal of Wildlife Research, 69. |
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 Telleria, J.L., Hernandez-Tellez, I., de la Hera, I., Aguirre, J.I. & Onrubia, A. 2022. Altitudinal seasonality as a potential driver of morphological diversification in rear-edge bird populations. Avian Research, 13. |
 Martínez-Miranzo, B., Banda, E., Gardiazábal, A., Ferreiro, E., Seoane, J. & Aguirre, J.I. 2022. Long-term monitoring program reveals a mismatch between spatial distribution and reproductive success in an endangered raptor species in the Mediterranean area. Ecologycal Research, 37(3): 421-431 |
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Ibáñez-Álamo, J.D., Pineda-Pampliega, J., Thomson, R.L., Aguirre, J.I., Díez-Fernández, A., Faivre, B., Figuerola, J. & Verhulst, S. 2018. Urban blackbirds have shorter telomeres. Biology Letters 14: 20180083. |
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 Martínez-Miranzo, B., Banda E.I. & Aguirre, J.I. 2016. Multiscale analysis of habitat selection by Bonelli’s eagle (Aquila fasciata) in NE Spain. European Journal of Wildlife Research 62: 673. |
 Martínez-Miranzo, B., Banda E.I., Gardiazábal, A., Ferreiro, E. & Aguirre, J.I. 2016. Differential spatial use and spatial fidelity by breeders of Bonelli´s Eagle. Journal of Ornithology 157: 971-979. |
 Roscales, J.L., Vicente, A., Muñoz-Arnanz, J., Morales, L., Abad, E. Aguirre, J.I. & Jimenez, B. 2016. Influence of trophic ecology on the accumulation of dioxins and furans (PCDD/Fs), non-ortho polychlorinated biphenyls (PCBs), and polybrominated diphenyl ethers (PBDEs) in Mediterranean gulls (Larus michahellis and L. audouinii): A three-isotope approach. Environmental Pollution 212: 307–315. |
 Machín, P., Fernández-Elipe, J., Flores, M., Fox, J.W., Aguirre, J.I. & Klaassen, R.H.G. 2015. Individual migration patterns of Eurasian golden plovers Pluvialis apricaria breeding in Swedish Lapland; examples of cold spell-induced winter movements. Journal of Avian Biology. 46 (6): 634–642. |
 Herrera-Dueñas, A., Pineda, J., Antonio, M.T. & Aguirre, J.I. 2014. Oxidative stress of House Sparrow as bioindicatorof urban pollution. Ecological Indicators. 2014:1648-1652. |
 Morganti, M., Aguirre, J.I., Onrubia, A. & Pulido, F. 2013. Complete post-juvenile moult in first-year blackcaps: proximate causes and adaptive implications. Ardeola. 60(1): 45-57. |
 Muñoz-Arnanz, J., Roscales, J.L. Vicente, A., Aguirre, J.I., & Jiménez, B. 2012. Dechlorane Plus in eggs of two gull species (Larus michahellis and Larus audouinii) from the south-western Mediterranean Sea. Analytical and Bioanalytical Chemistry. 404(9): 2765-73. |
 Muñoz-Arnanz, J., Sáez, M., Aguirre, J.I., Hiraldo, F., Baos, R. Pacepavicius, G., Alaee, M. & Jiménez, B. 2011. Predominance of BDE-209 and Other Higher Brominated Diphenyl Ethers in White Stork (Ciconia ciconia) colonies from Spain. Environment Internacional: 37 (3): 572-576. |
 Antonio, M.T., Hermosa, Y. y Aguirre, J.I. 2010. Does breeding status influence haematology and blood biochemistry of yellow-legged gulls? Acta Biologica Hungarica 61 (4): 391-400. |
 Vergara, P., Gordo, O. y Aguirre, J.I. 2010. Nest size, nest building behaviour and breeding success in a species with nest reuse: the White Stork Ciconia ciconia. Annales Zoologici Fennici 47: 184-194. |
| Aguirre, J.I., Arana, P. y Antonio, M.T. 2009. Discriminant functions to sex yellow legged gulls Larus michahellis by external measurements. Ardeola. 56 (2): 281-286. |
 Laiolo, P., Banda, E., Lemus, J.A., Aguirre, J.I.& Blanco, G. 2009. Behavioural responses to the stress of capture and handling in the Red-billed chough Pyrrhocorax pyrrhocorax. Biological Journal of the Linnean Society 96: 846-855. |
| Aguirre, J.I. & Vergara, P. 2009. Census methods on White stork (Ciconia ciconia): bias in sampling effort related to the frequency and date of nests' visits. Journal of Ornithology 150(1): 147-153. |
| Vergara, P., Aguirre, J.I. y Fargallo, J.A. 2007. Economical versus ecological development: a case study of white Storks on a cattle farm. Ardeola, 54 (2): 217-225. |
 Vergara, P., Aguirre, J.I. y Fernández-Cruz, M. 2007. Arrival date, age and breeding success in White stork Ciconia ciconia. Journal of Avian Biology, 38 (5): 573-579. |
 Aguirre, J.I. y Vergara, P. 2007. Younger, weaker white stork (Ciconia ciconia) nestlings become best breeders. Evolutionary Ecology Research, 9: 355-364. |
 Vergara, P. y Aguirre, J.I. 2006. Age and breeding success related with nest position in a White stork Ciconia ciconia colony. Acta Oecologica, 30: 414-418. |
 Vergara, P., Aguirre, J.I., Fargallo, J.A. y Dávila, J. 2006. Nest-site fidelity and breeding success in White Stork Ciconia ciconia. Ibis, 148: 672-677. |
García Sanjuán, C., Aguirre, J.I., Villaverde, S., Banda, E., Hernandez, S.M., Yabsley, M.J. 2022. Surveillance for gastrointestinal, subcutaneous, and ectoparasites of the invasive North American raccoons (Procyon lotor) in central Spain. Veterinary Parasitology: Regional Studies and Reports, 36. 
Izquierdo, L., Thomson, R.L., Aguirre, J.I., Díez‐Fernández, A., Faivre, B. Figuerola, J. & Ibáñez‐Álamo, J.D. 2018. Factors associated with leucism in the common blackbird Turdus merula. Journal of Avian Biology 49 (9): e01778. doi: 10.1111/jav.017 78.
Herrera-Dueñas, A., Pineda, J., Antonio, M.T. & Aguirre, J.I. 2017. The influence of urban environments on oxidative stress balance: a case study on the House Sparrow in the Iberian Peninsula. Frontiers in Ecology and Evolution 5: 106. 
Morganti, M., Assandri, G., Aguirre, J.I., Ramirez, A., Caffi, M. & Pulido, F. 2017. How residents behave: home rangeflexibility and dominance over migrants in a Mediterranean passerine. Animal Behaviour 
Ruiz-Martínez, J., Ferraguti, M., Figuerola, J., Martínez-de la Puente, J., Williams, R.A.J., Herrera-Dueñas, A., Aguirre, J.I., Soriguer, R., Escudero, C., Moens, M.A.J., Pérez-Tris, J. & Benítez, L. 2016. Prevalence and Genetic Diversity of Avipoxvirus in House Sparrows in Spain. PlosOne 